Other resources¶

List of available tools/resources related to Patch-seq experiments. I only listed open-source tools/resources (and github repo links if any). If you would like to list your open-source tools/resources here, please post a request in github issue page

Whole-cell recording analysis¶

eventer “Software for the detection of spontaneous synaptic currents” in Matlab
Stimfit “Stimfit is a free, fast and simple program for viewing and analyzing electrophysiological data”
aisynphys “Analysis tools specific to the aiephys multipatch project.”
pyABF “pyABF is a Python library for reading electrophysiology data from Axon Binary Format (ABF) files.”
Ephys from Dr. Paul Manis lab. It is an experimental suite of programs for analyzing electrophysiology data, written in Python

Morphology analysis¶

NeuroM “NeuroM is a Python toolkit for the analysis and processing of neuron morphologies.”
TREES toolbox Comprehensive morphology analysis and modeling in Matlab

Data standard¶

Neurodata Without Borders “Neurodata Without Borders (NWB) is a data standard for neurophysiology, providing neuroscientists with a common standard to share, archive, use, and build analysis tools for neurophysiology data.”
PyNWB “PyNWB is a Python package for working with NWB files. “